Combinatorial peptide library‐based identification of peptide ligands for tumor‐reactive cytolytic T lymphocytes of unknown specificity

V Rubio‐Godoy, M Ayyoub, V Dutoit… - European journal of …, 2002 - Wiley Online Library
V Rubio‐Godoy, M Ayyoub, V Dutoit, C Servis, A Schink, D Rimoldi, P Romero, JC Cerottini…
European journal of immunology, 2002Wiley Online Library
A novel approach for the identification of tumor antigen‐derived sequences recognized by
CD8+ cytolytic T lymphocytes (CTL) consists in using synthetic combinatorial peptide
libraries. Here we have screened a library composed of 3.1× 1011 nonapeptides arranged
in a positional scanning format, in a cytotoxicity assay, to search the antigen recognized by
melanoma‐reactive CTL of unknown specificity. The results of this analysis enabled the
identification of several optimal peptide ligands, as most of the individual nonapeptides …
Abstract
A novel approach for the identification of tumor antigen‐derived sequences recognized by CD8+ cytolytic T lymphocytes (CTL) consists in using synthetic combinatorial peptide libraries. Here we have screened a library composed of 3.1×1011 nonapeptides arranged in a positional scanning format, in a cytotoxicity assay, to search the antigen recognized by melanoma‐reactive CTL of unknown specificity. The results of this analysis enabled the identification of several optimal peptide ligands, as most of the individual nonapeptides deduced from the primary screeningwere efficiently recognized by the CTL. The results of the library screening were also analyzed with a mathematical approach based on a model of independent and additive contribution of individual amino acids to antigen recognition. This biometrical data analysis enabled the retrieval, in public databases, of the native antigenic peptide SSX‐241–49, whose sequence is highly homologous to the ones deduced from the library screening, among the ones with the highest stimulatory score. These results underline the high predictive value of positional scanning synthetic combinatorial peptide library analysis and encourage its use for the identification of CTL ligands.
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